Data & Code
IntronArchitecture
Code for predicting chromatin features from intron architecture in Arabidopsis thaliana from Pierce et al. 2025.
intronology R Package
An R package for annotating intron architecture across genomes.
Chromatin Data from Pierce et al. 2025
Processed chromatin feature data underlying the interactive apps and figures from Pierce et al. 2025.
Interactive Apps
Chromatin Feature Distribution Explorer
Metaplots showing average chromatin signal 3kb upstream and downstream the TSS, grouped by quantile bins of gene architecture features.
Chromatin Feature Scatterplot Explorer
Scatterplots showing mean chromatin signal across quantile bins of gene architecture features, across whole genes, exons, or introns.
Tutorials & Teaching
How to Make a Personal Website Using GitHub
Workshop materials from the Graduate Student and Postdoctoral SACNAS Chapter at UC Davis. Build your own free academic website using Jekyll and GitHub Pages.
How to Make an Effective Graphical Abstract or Scientific Illustration
Workshop co-presented with Sonhita Chakraborty at Plant Biology 2024 with over 150 attendees. Tips and tools for communicating science visually.